Installing¶
Using git¶
If you want to run the very latest, feel free to pull down the repo from github and install by hand.
git clone https://github.com/prashnts/metaRNA.git
cd metaRNA
python setup.py install
You can run the tests using the test-runner:
python setup.py test
Browse the source code online at https://github.com/prashnts/metaRNA
Pre-requisite¶
ViennaRNA is required to compile metaRNA C extensions. It is recommended to install ViennaRNA from source. On Unix-like systems, it usually involves:
wget 'http://www.tbi.univie.ac.at/RNA/download/sourcecode/2_2_x/ViennaRNA-2.2.10.tar.gz' -O viennarna.tar.gz
mkdir viennarna
tar -zxvf viennarna.tar.gz -C viennarna --strip-components=1
cd viennarna
./configure
make
sudo make install
Usual build essentials (automake
, autoconf
, gcc
) are required.
You can download the above package from this link if the above link isn’t accessible. To download and verify the SHA checksum:
wget "https://noop.pw/etc/vienna224.tar.gz" -O vienna224.tar.gz
echo "71a4c4704228fd01eb6e39415400a904d5240cef vienna224.tar.gz" | shasum -c
Windows System¶
metaRNA hasn’t been tested or built on Windows systems yet. Contributions are welcome.